J3_6SKF_039

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(4AC)GUAGG*CUG*UAAG

Length

13 nucleotides

Bulged bases

6SKF|1|BA|G|1438

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_039 not in the Motif Atlas

Geometric match to J3_4V9F_006

Geometric discrepancy: 0.2415

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|4AC|1434
6SKF|1|BA|G|1435
6SKF|1|BA|U|1436
6SKF|1|BA|A|1437
6SKF|1|BA|G|1438
6SKF|1|BA|G|1439
*
6SKF|1|BA|C|1771
6SKF|1|BA|U|1772
6SKF|1|BA|G|1773
*
6SKF|1|BA|U|1785
6SKF|1|BA|A|1786
6SKF|1|BA|A|1787
6SKF|1|BA|G|1788

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e