J3_6SKF_041

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMU)CGGUC*GGAAA*UA

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_041 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.2061

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6SKF|1|BA|OMU|1480
6SKF|1|BA|C|1481
6SKF|1|BA|G|1482
6SKF|1|BA|G|1483
6SKF|1|BA|U|1484
6SKF|1|BA|C|1485
*
6SKF|1|BA|G|1519
6SKF|1|BA|G|1520
6SKF|1|BA|A|1521
6SKF|1|BA|A|1522
6SKF|1|BA|A|1523
*
6SKF|1|BA|U|1540
6SKF|1|BA|A|1541

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BW

50S ribosomal protein L23

Chain Be

50S ribosomal protein L34e

Chain Bi

50S ribosomal protein L39e