J3_6SKG_022

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUC*GUGG*CAUUAAAG

Length

16 nucleotides

Bulged bases

6SKG|1|BA|A|2622, 6SKG|1|BA|U|2623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_022 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.1008

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6SKG|1|BA|C|2621
6SKG|1|BA|A|2622
6SKG|1|BA|U|2623
6SKG|1|BA|C|2624
*
6SKG|1|BA|G|2649
6SKG|1|BA|U|2650
6SKG|1|BA|G|2651
6SKG|1|BA|G|2652
*
6SKG|1|BA|C|2664
6SKG|1|BA|A|2665
6SKG|1|BA|U|2666
6SKG|1|BA|U|2667
6SKG|1|BA|A|2668
6SKG|1|BA|A|2669
6SKG|1|BA|A|2670
6SKG|1|BA|G|2671

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14