J3_6SKG_036

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAG*CGCCGGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6SKG|1|BA|G|360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_036 not in the Motif Atlas

Geometric match to J3_8VTW_041

Geometric discrepancy: 0.0873

The information below is about J3_8VTW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SKG|1|BA|C|335
6SKG|1|BA|G|336
6SKG|1|BA|A|337
6SKG|1|BA|A|338
6SKG|1|BA|G|339
*
6SKG|1|BA|C|355
6SKG|1|BA|G|356
6SKG|1|BA|C|357
6SKG|1|BA|C|358
6SKG|1|BA|G|359
6SKG|1|BA|G|360
6SKG|1|BA|A|361
6SKG|1|BA|G|362
6SKG|1|BA|A|363
6SKG|1|BA|G|364
*
6SKG|1|BA|C|376
6SKG|1|BA|G|377
6SKG|1|BA|U|378
6SKG|1|BA|A|379
6SKG|1|BA|G|380

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24