J3_6SKG_037

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMU)CGGUC*GGAAA*UA

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_037 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.2613

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|OMU|1480
6SKG|1|BA|C|1481
6SKG|1|BA|G|1482
6SKG|1|BA|G|1483
6SKG|1|BA|U|1484
6SKG|1|BA|C|1485
*
6SKG|1|BA|G|1519
6SKG|1|BA|G|1520
6SKG|1|BA|A|1521
6SKG|1|BA|A|1522
6SKG|1|BA|A|1523
*
6SKG|1|BA|U|1540
6SKG|1|BA|A|1541

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L23

Chain Be

50S ribosomal protein L34e

Chain Bi

50S ribosomal protein L39e