J3_6SKG_039

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCC*GCCUAGCGAACC*(OMG)AUGAC

Length

21 nucleotides

Bulged bases

6SKG|1|BA|A|2494, 6SKG|1|BA|A|2532

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_039 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.143

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6SKG|1|BA|G|2385
6SKG|1|BA|C|2386
6SKG|1|BA|C|2387
*
6SKG|1|BA|G|2490
6SKG|1|BA|C|2491
6SKG|1|BA|C|2492
6SKG|1|BA|U|2493
6SKG|1|BA|A|2494
6SKG|1|BA|G|2495
6SKG|1|BA|C|2496
6SKG|1|BA|G|2497
6SKG|1|BA|A|2498
6SKG|1|BA|A|2499
6SKG|1|BA|C|2500
6SKG|1|BA|C|2501
*
6SKG|1|BA|OMG|2528
6SKG|1|BA|A|2529
6SKG|1|BA|U|2530
6SKG|1|BA|G|2531
6SKG|1|BA|A|2532
6SKG|1|BA|C|2533

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BU

50S ribosomal protein L21e

Chain Bl

50S ribosomal protein L44e