J3_6SNT_009
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6SNT|1|1|U|1840, 6SNT|1|1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_009 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0739
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SNT|1|1|G|1488
6SNT|1|1|A|1489
6SNT|1|1|A|1490
6SNT|1|1|A|1491
*
6SNT|1|1|U|1837
6SNT|1|1|G|1838
6SNT|1|1|A|1839
6SNT|1|1|U|1840
6SNT|1|1|A|1841
6SNT|1|1|A|1842
6SNT|1|1|C|1843
*
6SNT|1|1|G|1852
6SNT|1|1|U|1853
6SNT|1|1|C|1854
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain aj
- 60S ribosomal protein L34-A
Coloring options: