J3_6SNT_011

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SNT_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.124

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SNT|1|1|C|1631
6SNT|1|1|A|1632
*
6SNT|1|1|U|1641
6SNT|1|1|A|1642
6SNT|1|1|A|1643
6SNT|1|1|C|1644
6SNT|1|1|U|1645
*
6SNT|1|1|A|1810
6SNT|1|1|G|1811

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain aj

60S ribosomal protein L34-A

Chain aq

60S ribosomal protein L27-A