J3_6SPB_005

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAAG*CGG*CAAG

Length

13 nucleotides

Bulged bases

6SPB|1|A|A|1289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPB_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1347

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SPB|1|A|C|1285
6SPB|1|A|G|1286
6SPB|1|A|A|1287
6SPB|1|A|A|1288
6SPB|1|A|A|1289
6SPB|1|A|G|1290
*
6SPB|1|A|C|1615
6SPB|1|A|G|1616
6SPB|1|A|G|1617
*
6SPB|1|A|C|1629
6SPB|1|A|A|1630
6SPB|1|A|A|1631
6SPB|1|A|G|1632

Current chains

Chain A

23S ribosomal RNA

Nearby chains