J3_6SPB_009
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6SPB|1|A|A|2321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPB_009 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.3623
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SPB|1|A|C|2282
6SPB|1|A|U|2283
6SPB|1|A|C|2284
*
6SPB|1|A|G|2308
6SPB|1|A|A|2309
6SPB|1|A|G|2310
*
6SPB|1|A|C|2319
6SPB|1|A|A|2320
6SPB|1|A|A|2321
6SPB|1|A|A|2322
6SPB|1|A|A|2323
6SPB|1|A|G|2324
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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