J3_6SPC_003
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUAG*CGCAG*CGAUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6SPC|1|a|U|865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPC_003 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.165
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6SPC|1|a|C|820
6SPC|1|a|U|821
6SPC|1|a|A|822
6SPC|1|a|G|823
*
6SPC|1|a|C|851
6SPC|1|a|G|852
6SPC|1|a|C|853
6SPC|1|a|A|854
6SPC|1|a|G|855
*
6SPC|1|a|C|862
6SPC|1|a|G|863
6SPC|1|a|A|864
6SPC|1|a|U|865
6SPC|1|a|A|866
6SPC|1|a|A|867
6SPC|1|a|G|868
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S21
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