J3_6SPD_006

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAAG*CGG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPD_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1449

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SPD|1|A|C|1285
6SPD|1|A|G|1286
6SPD|1|A|A|1287
6SPD|1|A|A|1288
6SPD|1|A|A|1289
6SPD|1|A|G|1290
*
6SPD|1|A|C|1615
6SPD|1|A|G|1616
6SPD|1|A|G|1617
*
6SPD|1|A|C|1629
6SPD|1|A|A|1630
6SPD|1|A|A|1631
6SPD|1|A|G|1632

Current chains

Chain A

23S ribosomal RNA

Nearby chains