J3_6SPD_015
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6SPD|1|A|U|439, 6SPD|1|A|C|447
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPD_015 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1395
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6SPD|1|A|C|32
6SPD|1|A|U|33
6SPD|1|A|U|34
6SPD|1|A|G|35
*
6SPD|1|A|C|436
6SPD|1|A|G|437
6SPD|1|A|A|438
6SPD|1|A|U|439
6SPD|1|A|A|440
6SPD|1|A|G|441
6SPD|1|A|U|442
6SPD|1|A|G|443
6SPD|1|A|A|444
6SPD|1|A|A|445
6SPD|1|A|C|446
6SPD|1|A|C|447
6SPD|1|A|A|448
6SPD|1|A|G|449
6SPD|1|A|U|450
6SPD|1|A|A|451
6SPD|1|A|C|452
*
6SPD|1|A|G|459
6SPD|1|A|G|460
6SPD|1|A|A|461
6SPD|1|A|A|462
6SPD|1|A|A|463
6SPD|1|A|G|464
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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