J3_6SPD_017

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPD_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1698

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|G|1411
6SPD|1|A|G|1412
6SPD|1|A|G|1413
6SPD|1|A|A|1414
6SPD|1|A|C|1415
6SPD|1|A|G|1416
*
6SPD|1|A|C|1554
6SPD|1|A|C|1555
*
6SPD|1|A|G|1558
6SPD|1|A|A|1559
6SPD|1|A|A|1560
6SPD|1|A|A|1561
6SPD|1|A|A|1562
6SPD|1|A|G|1563
6SPD|1|A|C|1564

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2