J3_6SPF_003

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

6SPF|1|A|U|676, 6SPF|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0843

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|C|673
6SPF|1|A|G|674
6SPF|1|A|A|675
6SPF|1|A|U|676
6SPF|1|A|C|677
6SPF|1|A|U|678
6SPF|1|A|A|679
*
6SPF|1|A|U|763
6SPF|1|A|C|764
6SPF|1|A|G|765
*
6SPF|1|A|C|781
6SPF|1|A|A|782
6SPF|1|A|A|783
6SPF|1|A|G|784

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2