J3_6SPF_006

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6SPF|1|A|C|1597, 6SPF|1|A|A|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.4016

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6SPF|1|A|C|1293
6SPF|1|A|A|1294
6SPF|1|A|A|1295
6SPF|1|A|G|1296
*
6SPF|1|A|C|1595
6SPF|1|A|C|1596
6SPF|1|A|C|1597
6SPF|1|A|A|1598
6SPF|1|A|A|1599
6SPF|1|A|A|1600
6SPF|1|A|C|1601
*
6SPF|1|A|G|1610
6SPF|1|A|U|1611
6SPF|1|A|G|1612

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34