J3_6SPF_007

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0699

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6SPF|1|A|C|2078
6SPF|1|A|U|2079
6SPF|1|A|G|2080
*
6SPF|1|A|C|2183
6SPF|1|A|U|2184
6SPF|1|A|A|2185
6SPF|1|A|A|2186
6SPF|1|A|C|2187
*
6SPF|1|A|G|2210
6SPF|1|A|G|2211
6SPF|1|A|A|2212
6SPF|1|A|C|2213
6SPF|1|A|A|2214
6SPF|1|A|G|2215

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28