J3_6SPF_010
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GGCC*GUUGAU*AAUGGCC
- Length
- 17 nucleotides
- Bulged bases
- 6SPF|1|A|U|2820, 6SPF|1|A|U|2871, 6SPF|1|A|G|2872
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_010 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.5084
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SPF|1|A|G|2799
6SPF|1|A|G|2800
6SPF|1|A|C|2801
6SPF|1|A|C|2802
*
6SPF|1|A|G|2818
6SPF|1|A|U|2819
6SPF|1|A|U|2820
6SPF|1|A|G|2821
6SPF|1|A|A|2822
6SPF|1|A|U|2823
*
6SPF|1|A|A|2869
6SPF|1|A|A|2870
6SPF|1|A|U|2871
6SPF|1|A|G|2872
6SPF|1|A|G|2873
6SPF|1|A|C|2874
6SPF|1|A|C|2875
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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