J3_6SPF_016

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UG*UGUUG*CGUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_016 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1444

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SPF|1|a|U|1067
6SPF|1|a|G|1068
*
6SPF|1|a|U|1077
6SPF|1|a|G|1078
6SPF|1|a|U|1079
6SPF|1|a|U|1080
6SPF|1|a|G|1081
*
6SPF|1|a|C|1092
6SPF|1|a|G|1093
6SPF|1|a|U|1094
6SPF|1|a|A|1095
6SPF|1|a|A|1096

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5