J3_6SPF_021

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UCGGUUC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_021 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5676

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6SPF|1|A|U|1331
6SPF|1|A|C|1332
6SPF|1|A|G|1333
6SPF|1|A|G|1334
6SPF|1|A|U|1335
6SPF|1|A|U|1336
6SPF|1|A|C|1337
*
6SPF|1|A|G|1368
6SPF|1|A|G|1369
6SPF|1|A|A|1370
6SPF|1|A|A|1371
6SPF|1|A|A|1372
*
6SPF|1|A|U|1389
6SPF|1|A|A|1390

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23