J3_6SPF_028
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 6SPF|1|a|U|717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_028 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2213
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SPF|1|a|U|666
6SPF|1|a|G|667
*
6SPF|1|a|C|711
6SPF|1|a|A|712
6SPF|1|a|C|713
6SPF|1|a|C|714
6SPF|1|a|A|715
6SPF|1|a|G|716
6SPF|1|a|U|717
6SPF|1|a|G|718
6SPF|1|a|G|719
*
6SPF|1|a|C|726
6SPF|1|a|G|727
6SPF|1|a|A|728
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
- Chain u
- 30S ribosomal protein S21
Coloring options: