J3_6SPF_031
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UG*UGUU*GUAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_031 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1261
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6SPF|1|a|U|1067
6SPF|1|a|G|1068
*
6SPF|1|a|U|1077
6SPF|1|a|G|1078
6SPF|1|a|U|1079
6SPF|1|a|U|1080
*
6SPF|1|a|G|1093
6SPF|1|a|U|1094
6SPF|1|a|A|1095
6SPF|1|a|A|1096
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
Coloring options: