J3_6SPG_021
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_021 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1444
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SPG|1|a|C|1057
6SPG|1|a|G|1058
6SPG|1|a|U|1059
6SPG|1|a|C|1060
6SPG|1|a|A|1061
6SPG|1|a|G|1062
*
6SPG|1|a|C|1101
6SPG|1|a|G|1102
6SPG|1|a|C|1103
6SPG|1|a|A|1104
6SPG|1|a|A|1105
6SPG|1|a|C|1106
6SPG|1|a|C|1107
*
6SPG|1|a|G|1181
6SPG|1|a|A|1182
6SPG|1|a|U|1183
6SPG|1|a|G|1184
6SPG|1|a|A|1185
6SPG|1|a|C|1186
6SPG|1|a|G|1187
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: