J3_6SPG_036
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCUAC
- Length
- 29 nucleotides
- Bulged bases
- 6SPG|1|a|A|969, 6SPG|1|a|G|970, 6SPG|1|a|A|972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_036 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.1662
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SPG|1|a|G|948
6SPG|1|a|U|949
6SPG|1|a|U|950
6SPG|1|a|U|951
6SPG|1|a|A|952
6SPG|1|a|A|953
6SPG|1|a|U|954
6SPG|1|a|U|955
6SPG|1|a|C|956
*
6SPG|1|a|G|967
6SPG|1|a|A|968
6SPG|1|a|A|969
6SPG|1|a|G|970
6SPG|1|a|A|971
6SPG|1|a|A|972
6SPG|1|a|C|973
6SPG|1|a|C|974
6SPG|1|a|U|975
6SPG|1|a|U|976
6SPG|1|a|A|977
6SPG|1|a|C|978
6SPG|1|a|C|979
*
6SPG|1|a|G|1214
6SPG|1|a|G|1215
6SPG|1|a|G|1216
6SPG|1|a|C|1217
6SPG|1|a|U|1218
6SPG|1|a|A|1219
6SPG|1|a|C|1220
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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