J3_6SPG_039

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPG_039 not in the Motif Atlas

Geometric match to J3_8CRE_012

Geometric discrepancy: 0.3721

The information below is about J3_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6SPG|1|A|G|1045
6SPG|1|A|G|1046
6SPG|1|A|A|1047
*
6SPG|1|A|U|1071
6SPG|1|A|U|1072
6SPG|1|A|U|1073
6SPG|1|A|A|1074
6SPG|1|A|A|1075
6SPG|1|A|A|1076
6SPG|1|A|G|1077
*
6SPG|1|A|C|1092
6SPG|1|A|A|1093
6SPG|1|A|C|1094

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain I

50S ribosomal protein L11