J3_6SPG_041
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6SPG|1|a|C|48, 6SPG|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_041 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1344
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SPG|1|a|G|46
6SPG|1|a|C|47
6SPG|1|a|C|48
6SPG|1|a|U|49
6SPG|1|a|A|50
6SPG|1|a|A|51
6SPG|1|a|C|52
*
6SPG|1|a|G|353
6SPG|1|a|G|354
6SPG|1|a|G|355
6SPG|1|a|G|356
6SPG|1|a|A|357
6SPG|1|a|A|358
6SPG|1|a|U|359
6SPG|1|a|A|360
6SPG|1|a|U|361
*
6SPG|1|a|A|387
6SPG|1|a|G|388
6SPG|1|a|C|389
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
Coloring options: