J3_6SV4_011

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_011 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1513

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SV4|1|2|U|1293
6SV4|1|2|G|1294
*
6SV4|1|2|U|1303
6SV4|1|2|G|1304
6SV4|1|2|U|1305
6SV4|1|2|C|1306
*
6SV4|1|2|G|1318
6SV4|1|2|A|1319
6SV4|1|2|U|1320
6SV4|1|2|A|1321
6SV4|1|2|A|1322

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S17-B

Chain P

40S ribosomal protein S0-A

Chain R

40S ribosomal protein S2