J3_6SV4_015
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 6SV4|1|2b|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_015 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.1076
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6SV4|1|2b|U|633
6SV4|1|2b|G|634
6SV4|1|2b|A|635
*
6SV4|1|2b|U|861
6SV4|1|2b|A|862
6SV4|1|2b|A|863
6SV4|1|2b|U|864
6SV4|1|2b|A|865
*
6SV4|1|2b|U|965
6SV4|1|2b|A|966
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Ub
- 40S ribosomal protein S7-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain Yb
- 40S ribosomal protein S13
- Chain bb
- 40S ribosomal protein S22-A
- Chain cb
- 40S ribosomal protein S23-A
- Chain fb
- 40S ribosomal protein S27-A
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