J3_6SV4_023
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|2b|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_023 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.1613
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2b|U|1283
6SV4|1|2b|C|1284
6SV4|1|2b|U|1285
6SV4|1|2b|U|1286
6SV4|1|2b|A|1287
6SV4|1|2b|G|1288
*
6SV4|1|2b|C|1327
6SV4|1|2b|G|1328
6SV4|1|2b|A|1329
6SV4|1|2b|G|1330
6SV4|1|2b|A|1331
6SV4|1|2b|C|1332
*
6SV4|1|2b|G|1419
6SV4|1|2b|C|1420
6SV4|1|2b|A|1421
6SV4|1|2b|A|1422
6SV4|1|2b|U|1423
6SV4|1|2b|A|1424
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Ab
- 40S ribosomal protein S3
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Gb
- 40S ribosomal protein S17-B
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
- Chain Rb
- 40S ribosomal protein S2
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