J3_6SV4_035
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|2c|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_035 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.299
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SV4|1|2c|U|1283
6SV4|1|2c|C|1284
6SV4|1|2c|U|1285
6SV4|1|2c|U|1286
6SV4|1|2c|A|1287
6SV4|1|2c|G|1288
*
6SV4|1|2c|C|1327
6SV4|1|2c|G|1328
6SV4|1|2c|A|1329
6SV4|1|2c|G|1330
6SV4|1|2c|A|1331
6SV4|1|2c|C|1332
*
6SV4|1|2c|G|1419
6SV4|1|2c|C|1420
6SV4|1|2c|A|1421
6SV4|1|2c|A|1422
6SV4|1|2c|U|1423
6SV4|1|2c|A|1424
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Ac
- 40S ribosomal protein S3
- Chain Fc
- 40S ribosomal protein S16-A
- Chain Gc
- 40S ribosomal protein S17-B
- Chain Jc
- 40S ribosomal protein S20
- Chain Mc
- 40S ribosomal protein S29-A
- Chain Rc
- 40S ribosomal protein S2
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