J3_6SV4_045

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

6SV4|1|BQ|A|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_045 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3232

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|BQ|G|1230
6SV4|1|BQ|A|1231
6SV4|1|BQ|C|1232
*
6SV4|1|BQ|G|1256
6SV4|1|BQ|C|1257
6SV4|1|BQ|U|1258
6SV4|1|BQ|A|1259
6SV4|1|BQ|A|1260
6SV4|1|BQ|G|1261
6SV4|1|BQ|G|1262
*
6SV4|1|BQ|C|1277
6SV4|1|BQ|A|1278
6SV4|1|BQ|C|1279

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BU

60S acidic ribosomal protein P0