J3_6SV4_056
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6SV4|1|BS|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_056 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1281
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SV4|1|BS|A|44
6SV4|1|BS|C|45
*
6SV4|1|BS|G|58
6SV4|1|BS|A|59
6SV4|1|BS|U|60
6SV4|1|BS|A|61
6SV4|1|BS|C|62
6SV4|1|BS|G|63
6SV4|1|BS|U|64
*
6SV4|1|BS|A|96
6SV4|1|BS|A|97
6SV4|1|BS|U|98
6SV4|1|BS|C|99
6SV4|1|BS|U|100
Current chains
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain BP
- 60S ribosomal protein L35-A
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