J3_6SV4_061
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_061 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1179
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6SV4|1|YQ|U|829
6SV4|1|YQ|A|830
6SV4|1|YQ|G|831
*
6SV4|1|YQ|C|863
6SV4|1|YQ|G|864
6SV4|1|YQ|U|865
6SV4|1|YQ|A|866
6SV4|1|YQ|G|867
*
6SV4|1|YQ|U|892
6SV4|1|YQ|C|893
6SV4|1|YQ|G|894
6SV4|1|YQ|A|895
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XW
- 60S ribosomal protein L2-A
- Chain YF
- 60S ribosomal protein L19-A
- Chain YN
- 60S ribosomal protein L34-A
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