J3_6SV4_062

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

6SV4|1|YQ|A|1065, 6SV4|1|YQ|U|1094, 6SV4|1|YQ|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_062 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.3908

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6SV4|1|YQ|U|986
6SV4|1|YQ|U|987
*
6SV4|1|YQ|A|1062
6SV4|1|YQ|G|1063
6SV4|1|YQ|A|1064
6SV4|1|YQ|A|1065
6SV4|1|YQ|G|1066
*
6SV4|1|YQ|C|1092
6SV4|1|YQ|A|1093
6SV4|1|YQ|U|1094
6SV4|1|YQ|U|1095
6SV4|1|YQ|U|1096
6SV4|1|YQ|G|1097
6SV4|1|YQ|A|1098

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YJ

60S ribosomal protein L21-A

Chain YO

60S ribosomal protein L7-A