J3_6SV4_066
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_066 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.0896
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6SV4|1|YQ|U|1526
6SV4|1|YQ|C|1527
6SV4|1|YQ|G|1528
6SV4|1|YQ|A|1529
6SV4|1|YQ|U|1530
6SV4|1|YQ|C|1531
*
6SV4|1|YQ|G|1591
6SV4|1|YQ|G|1592
6SV4|1|YQ|A|1593
6SV4|1|YQ|A|1594
6SV4|1|YQ|U|1595
*
6SV4|1|YQ|A|1612
6SV4|1|YQ|A|1613
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XH
- 60S ribosomal protein L25
- Chain XI
- 60S ribosomal protein L38
- Chain XL
- 60S ribosomal protein L39
- Chain YN
- 60S ribosomal protein L34-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: