J3_6SV4_075
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|117, 6SV4|1|ZQ|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_075 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.1007
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|ZQ|C|113
6SV4|1|ZQ|A|114
6SV4|1|ZQ|A|115
6SV4|1|ZQ|A|116
6SV4|1|ZQ|U|117
6SV4|1|ZQ|U|118
6SV4|1|ZQ|U|119
6SV4|1|ZQ|G|120
6SV4|1|ZQ|A|121
6SV4|1|ZQ|A|122
6SV4|1|ZQ|A|123
*
6SV4|1|ZQ|U|149
6SV4|1|ZQ|A|150
6SV4|1|ZQ|A|151
6SV4|1|ZQ|U|152
6SV4|1|ZQ|U|153
6SV4|1|ZQ|U|154
6SV4|1|ZQ|G|155
6SV4|1|ZQ|G|156
6SV4|1|ZQ|A|157
6SV4|1|ZQ|G|158
*
6SV4|1|ZQ|C|263
6SV4|1|ZQ|G|264
6SV4|1|ZQ|A|265
6SV4|1|ZQ|A|266
6SV4|1|ZQ|G|267
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZP
- 60S ribosomal protein L35-A
- Chain zA
- 60S ribosomal protein L8-A
- Chain zC
- 60S ribosomal protein L36-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zQ
- 60S ribosomal protein L15-A
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