J3_6SV4_077
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_077 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1528
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|ZQ|U|502
6SV4|1|ZQ|C|503
*
6SV4|1|ZQ|G|588
6SV4|1|ZQ|A|589
6SV4|1|ZQ|G|590
6SV4|1|ZQ|G|591
6SV4|1|ZQ|A|592
6SV4|1|ZQ|C|593
6SV4|1|ZQ|U|594
6SV4|1|ZQ|G|595
6SV4|1|ZQ|C|596
6SV4|1|ZQ|G|597
*
6SV4|1|ZQ|C|606
6SV4|1|ZQ|A|607
6SV4|1|ZQ|A|608
6SV4|1|ZQ|G|609
6SV4|1|ZQ|G|610
6SV4|1|ZQ|A|611
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain ZG
- 60S ribosomal protein L32
- Chain ZM
- 60S ribosomal protein L6-A
- Chain ZO
- 60S ribosomal protein L7-A
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