J3_6SV4_101

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6SV4|1|2c|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_101 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1974

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|2c|A|41
6SV4|1|2c|G|42
6SV4|1|2c|A|43
6SV4|1|2c|U|44
6SV4|1|2c|U|45
6SV4|1|2c|A|46
6SV4|1|2c|A|47
6SV4|1|2c|G|48
*
6SV4|1|2c|C|431
6SV4|1|2c|G|432
6SV4|1|2c|C|433
6SV4|1|2c|G|434
6SV4|1|2c|C|435
6SV4|1|2c|A|436
6SV4|1|2c|A|437
6SV4|1|2c|A|438
6SV4|1|2c|U|439
*
6SV4|1|2c|A|464
6SV4|1|2c|G|465
6SV4|1|2c|U|466

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A

Chain cc

40S ribosomal protein S23-A