J3_6SV4_123
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|343, 6SV4|1|ZQ|A|351, 6SV4|1|ZS|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_123 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0729
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|ZQ|C|340
6SV4|1|ZQ|G|341
6SV4|1|ZQ|A|342
6SV4|1|ZQ|U|343
6SV4|1|ZQ|A|344
6SV4|1|ZQ|G|345
6SV4|1|ZQ|C|346
6SV4|1|ZQ|G|347
6SV4|1|ZQ|A|348
6SV4|1|ZQ|A|349
6SV4|1|ZQ|C|350
6SV4|1|ZQ|A|351
6SV4|1|ZQ|A|352
6SV4|1|ZQ|G|353
6SV4|1|ZQ|U|354
6SV4|1|ZQ|A|355
6SV4|1|ZQ|C|356
*
6SV4|1|ZQ|G|363
6SV4|1|ZQ|G|364
6SV4|1|ZQ|A|365
6SV4|1|ZQ|A|366
6SV4|1|ZQ|A|367
6SV4|1|ZQ|G|368
*
6SV4|1|ZS|C|21
6SV4|1|ZS|U|22
6SV4|1|ZS|U|23
6SV4|1|ZS|G|24
Current chains
- Chain ZQ
- 25S rRNA
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain zF
- 60S ribosomal protein L37-A
- Chain zK
- 60S ribosomal protein L26-A
- Chain zL
- 60S ribosomal protein L39
Coloring options: