J3_6SWA_005

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6SWA|1|q|A|1516, 6SWA|1|q|G|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SWA_005 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1233

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|U|1513
6SWA|1|q|G|1514
6SWA|1|q|A|1515
6SWA|1|q|A|1516
6SWA|1|q|C|1517
6SWA|1|q|U|1518
6SWA|1|q|A|1519
*
6SWA|1|q|U|1604
6SWA|1|q|A|1605
6SWA|1|q|G|1606
*
6SWA|1|q|C|1622
6SWA|1|q|G|1623
6SWA|1|q|A|1624
6SWA|1|q|A|1625

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain M

60S ribosomal protein L15

Chain h

60S ribosomal protein L37