J3_6SWA_008

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6SWA|1|q|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SWA_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1714

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|C|2372
6SWA|1|q|G|2373
6SWA|1|q|A|2374
6SWA|1|q|A|2375
6SWA|1|q|G|2376
6SWA|1|q|U|2377
6SWA|1|q|G|2378
*
6SWA|1|q|C|2784
6SWA|1|q|A|2785
6SWA|1|q|A|2786
*
6SWA|1|q|U|2798
6SWA|1|q|C|2799
6SWA|1|q|U|2800
6SWA|1|q|G|2801

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain e

60S ribosomal protein L34

Chain o

60S ribosomal protein L19