J3_6SWA_009

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6SWA|1|q|U|2767, 6SWA|1|q|A|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SWA_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1721

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|G|2381
6SWA|1|q|A|2382
6SWA|1|q|A|2383
6SWA|1|q|G|2384
*
6SWA|1|q|C|2764
6SWA|1|q|C|2765
6SWA|1|q|A|2766
6SWA|1|q|U|2767
6SWA|1|q|A|2768
6SWA|1|q|U|2769
6SWA|1|q|C|2770
*
6SWA|1|q|G|2779
6SWA|1|q|U|2780
6SWA|1|q|C|2781

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain e

60S ribosomal protein L34

Chain h

60S ribosomal protein L37

Chain j

60S ribosomal protein L39