J3_6SZS_007

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6SZS|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SZS_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1437

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6SZS|1|A|C|1306
6SZS|1|A|A|1307
6SZS|1|A|A|1308
6SZS|1|A|G|1309
*
6SZS|1|A|C|1605
6SZS|1|A|C|1606
6SZS|1|A|C|1607
6SZS|1|A|A|1608
6SZS|1|A|A|1609
6SZS|1|A|A|1610
6SZS|1|A|C|1611
*
6SZS|1|A|G|1620
6SZS|1|A|U|1621
6SZS|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34