J3_6SZS_026
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 6SZS|1|a|U|1240, 6SZS|1|a|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SZS_026 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1482
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SZS|1|a|C|1237
6SZS|1|a|A|1238
6SZS|1|a|A|1239
6SZS|1|a|U|1240
6SZS|1|a|G|1241
*
6SZS|1|a|C|1296
6SZS|1|a|G|1297
6SZS|1|a|U|1298
6SZS|1|a|A|1299
6SZS|1|a|G|1300
6SZS|1|a|U|1301
6SZS|1|a|C|1302
6SZS|1|a|C|1303
*
6SZS|1|a|G|1334
6SZS|1|a|U|1335
6SZS|1|a|C|1336
6SZS|1|a|G|1337
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: