3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GAAA*UGAUAAC*GUC
Length
14 nucleotides
Bulged bases
6T4Q|1|C1|U|1840, 6T4Q|1|C1|A|1841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_009 not in the Motif Atlas
Homologous match to J3_5TBW_009
Geometric discrepancy: 0.0635
The information below is about J3_5TBW_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6T4Q|1|C1|G|1488
6T4Q|1|C1|A|1489
6T4Q|1|C1|A|1490
6T4Q|1|C1|A|1491
*
6T4Q|1|C1|U|1837
6T4Q|1|C1|G|1838
6T4Q|1|C1|A|1839
6T4Q|1|C1|U|1840
6T4Q|1|C1|A|1841
6T4Q|1|C1|A|1842
6T4Q|1|C1|C|1843
*
6T4Q|1|C1|G|1852
6T4Q|1|C1|U|1853
6T4Q|1|C1|C|1854

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain Lg
60S ribosomal protein L34-A
Chain Lj
60S ribosomal protein L37-A
Chain Ll
60S ribosomal protein L39

Coloring options:


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