3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
6T4Q|1|C1|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_014 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.0945
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6T4Q|1|C1|C|2664
6T4Q|1|C1|U|2665
6T4Q|1|C1|C|2666
*
6T4Q|1|C1|G|2690
6T4Q|1|C1|A|2691
6T4Q|1|C1|A|2692
*
6T4Q|1|C1|U|2701
6T4Q|1|C1|A|2702
6T4Q|1|C1|A|2703
6T4Q|1|C1|A|2704
6T4Q|1|C1|A|2705
6T4Q|1|C1|G|2706

Current chains

Chain C1
25S rRNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain C4
5S ribosomal RNA; 5S rRNA
Chain LD
60S ribosomal protein L5
Chain LJ
60S ribosomal protein L11-B
Chain LT
60S ribosomal protein L21-A

Coloring options:


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