3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CCAGAC*GGGUG*UUAGACG
Length
18 nucleotides
Bulged bases
6T4Q|1|C2|A|1217, 6T4Q|1|C2|G|1445, 6T4Q|1|C2|C|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_025 not in the Motif Atlas
Homologous match to J3_4V88_038
Geometric discrepancy: 0.1072
The information below is about J3_4V88_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_75993.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

6T4Q|1|C2|C|1215
6T4Q|1|C2|C|1216
6T4Q|1|C2|A|1217
6T4Q|1|C2|G|1218
6T4Q|1|C2|A|1219
6T4Q|1|C2|C|1220
*
6T4Q|1|C2|G|1263
6T4Q|1|C2|G|1264
6T4Q|1|C2|G|1265
6T4Q|1|C2|U|1266
6T4Q|1|C2|G|1267
*
6T4Q|1|C2|U|1442
6T4Q|1|C2|U|1443
6T4Q|1|C2|A|1444
6T4Q|1|C2|G|1445
6T4Q|1|C2|A|1446
6T4Q|1|C2|C|1447
6T4Q|1|C2|G|1448

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SK
40S ribosomal protein S10-A
Chain Sd
40S ribosomal protein S29-A
Chain Sf
Ubiquitin-40S ribosomal protein S31

Coloring options:


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