J3_6T4Q_029
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6T4Q|1|C2|U|1473, 6T4Q|1|C2|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T4Q_029 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1166
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6T4Q|1|C2|C|1470
6T4Q|1|C2|A|1471
6T4Q|1|C2|C|1472
6T4Q|1|C2|U|1473
6T4Q|1|C2|G|1474
*
6T4Q|1|C2|C|1533
6T4Q|1|C2|G|1534
6T4Q|1|C2|U|1535
6T4Q|1|C2|G|1536
6T4Q|1|C2|C|1537
6T4Q|1|C2|U|1538
6T4Q|1|C2|G|1539
6T4Q|1|C2|G|1540
*
6T4Q|1|C2|C|1571
6T4Q|1|C2|G|1572
6T4Q|1|C2|A|1573
6T4Q|1|C2|G|1574
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SF
- Rps5p
- Chain SS
- 40S ribosomal protein S18-A
- Chain ST
- 40S ribosomal protein S19-A
- Chain SZ
- 40S ribosomal protein S25-A
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