3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
6T4Q|1|C2|U|1473, 6T4Q|1|C2|G|1539
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_029 not in the Motif Atlas
Homologous match to J3_8C3A_044
Geometric discrepancy: 0.1166
The information below is about J3_8C3A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.4
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
Number of instances in this motif group
5

Unit IDs

6T4Q|1|C2|C|1470
6T4Q|1|C2|A|1471
6T4Q|1|C2|C|1472
6T4Q|1|C2|U|1473
6T4Q|1|C2|G|1474
*
6T4Q|1|C2|C|1533
6T4Q|1|C2|G|1534
6T4Q|1|C2|U|1535
6T4Q|1|C2|G|1536
6T4Q|1|C2|C|1537
6T4Q|1|C2|U|1538
6T4Q|1|C2|G|1539
6T4Q|1|C2|G|1540
*
6T4Q|1|C2|C|1571
6T4Q|1|C2|G|1572
6T4Q|1|C2|A|1573
6T4Q|1|C2|G|1574

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SF
Rps5p
Chain SS
40S ribosomal protein S18-A
Chain ST
40S ribosomal protein S19-A
Chain SZ
40S ribosomal protein S25-A

Coloring options:


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