3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
UUGAAAAG*CG*CA
Length
12 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T59_002 not in the Motif Atlas
Homologous match to J3_5TBW_002
Geometric discrepancy: 0.1187
The information below is about J3_5TBW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

6T59|1|54|U|380
6T59|1|54|U|381
6T59|1|54|G|382
6T59|1|54|A|383
6T59|1|54|A|384
6T59|1|54|A|385
6T59|1|54|A|386
6T59|1|54|G|387
*
6T59|1|54|C|414
6T59|1|54|G|415
*
6T59|1|84|C|19
6T59|1|84|A|20

Current chains

Chain 54
28S ribosomal RNA
Chain 84
5.8S ribosomal RNA

Nearby chains

Chain C3
uL4
Chain Y3
Ribosomal protein L26
Chain l3
eL39

Coloring options:


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