J3_6T59_019
3D structure
- PDB id
- 6T59 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6T59|1|54|U|354, 6T59|1|54|A|362, 6T59|1|84|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T59_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0645
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6T59|1|54|C|351
6T59|1|54|G|352
6T59|1|54|A|353
6T59|1|54|U|354
6T59|1|54|A|355
6T59|1|54|G|356
6T59|1|54|U|357
6T59|1|54|C|358
6T59|1|54|A|359
6T59|1|54|A|360
6T59|1|54|C|361
6T59|1|54|A|362
6T59|1|54|A|363
6T59|1|54|G|364
6T59|1|54|U|365
6T59|1|54|A|366
6T59|1|54|C|367
*
6T59|1|54|G|374
6T59|1|54|G|375
6T59|1|54|A|376
6T59|1|54|A|377
6T59|1|54|A|378
6T59|1|54|G|379
*
6T59|1|84|C|21
6T59|1|84|U|22
6T59|1|84|C|23
6T59|1|84|G|24
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Tubulin Beta
- Chain C3
- uL4
- Chain Y3
- Ribosomal protein L26
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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